PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G222900.1
Common NameB456_010G222900, LOC105771513
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 227aa    MW: 25361.7 Da    PI: 6.0837
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G222900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.6e-1856105255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+Wv+eIr+p+    ++r++lg+f tae+Aa a+++a++ + g
  Gorai.010G222900.1  56 RYRGVRQRH-WGSWVSEIRHPVL---KTRIWLGTFETAEDAATAYDEAARLMCG 105
                         69******9.**********744...5**********************87765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-3355115No hitNo description
PfamPF008472.9E-1056105IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2056115IPR016177DNA-binding domain
SMARTSM003801.7E-3856119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-3356113IPR001471AP2/ERF domain
PROSITE profilePS5103220.58756113IPR001471AP2/ERF domain
PRINTSPR003671.2E-105768IPR001471AP2/ERF domain
PRINTSPR003671.2E-107995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSLFHLSLDS PTSLFLLFSY SSFVLFLSGL FTNTLLLEHS LKLFLVETTM GRPQQRYRGV  60
RQRHWGSWVS EIRHPVLKTR IWLGTFETAE DAATAYDEAA RLMCGAKART NFPYNPNDPT  120
SSSKLLSATL AAKLHKCHMA ALQLAKTNAA KESYSAQCHP LTPTHGITGN NAETGYRRQP  180
EIKWEAEENP VGSEQQFIPL EDDDIDQMIE ELLDYGSIEL CSSSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1855117467ATERF1
3gcc_A1e-1855117467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448420.11e-170PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW58e-75ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0D2UH471e-170A0A0D2UH47_G
STRINGPOPTR_0001s14720.19e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.18e-54ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]